Table Of Contents

evaluate-overlap

Synopsis

evaluate-overlap <target> <source>... [options]

Description

Computes the overlap of either two intensity images (average SI) or two segmentations (see evaluate-overlap -label). If more than one source image is given, the overlap between each of these and the target is evaluated.

Arguments

target

Target image/segmentation.

source

Transformed source image/segmentation.

Command options

-Rx1 <int>

Region of interest

-Ry1 <int>

Region of interest

-Rz1 <int>

Region of interest

-Rx2 <int>

Region of interest

-Ry2 <int>

Region of interest

-Rz2 <int>

Region of interest

-Tp <value>

Padding value in target.

-label <int>

Segmentation label. (default: none)

-precision <int>

Number of significant digits. (default: 2)

-metric <Sensitivity|Specificity|Dice|Jaccard>

Overlap metric. (default: Dice)

-delim <char>

Delimiter for output of multiple overlap values. (default: ,)

Standard options

-v, -verbose [n]

Increase/Set verbosity of output messages. (default: 0)

-debug [level]

Increase/Set debug level for output of intermediate results. (default: 0)

-version [major.minor]

Print version and exit or set version to emulate.

-revision

Print revision (or version) number only and exit.

-h, -help

Print help and exit.

Terminal options

-color, -nocolor

Enable/disable colored output. (default: off)

Parallelization options

-threads <n>

Use maximal <n> threads for parallel execution. (default: automatic)