#include <ImageCovariance.h>
Inheritance diagram for mirtk::ImageCovariance:
Collaboration diagram for mirtk::ImageCovariance:
Public Member Functions | |
| ImageCovariance (const char *="") | |
| Constructor. | |
| ImageCovariance (const ImageCovariance &) | |
| Copy constructor. | |
| ImageCovariance & | operator= (const ImageCovariance &) |
| Assignment operator. | |
| virtual double | RawValue (double) const |
| ~ImageCovariance () | |
| Destructor. | |
 Public Member Functions inherited from mirtk::HistogramImageSimilarity | |
| void | CopyAttributes (const HistogramImageSimilarity &) |
| Copy attributes of this class from another instance. | |
| virtual void | Exclude (const blocked_range3d< int > &) |
| virtual void | Include (const blocked_range3d< int > &) |
| virtual void | Initialize () |
| Initialize similarity measure once input and parameters have been set. | |
| mirtkAttributeMacro (JointHistogramType, Histogram) | |
| Joint histogram of image intensities (cubic B-spline Parzen windows) | |
| mirtkLooseComponentMacro (JointHistogramType, Samples) | |
| mirtkPublicAttributeMacro (bool, UseParzenWindow) | |
| Whether to use a Parzen window function. | |
| mirtkPublicAttributeMacro (bool, PadHistogram) | |
| Whether to pad histogram when performing Parzen window estimation. | |
| mirtkPublicAttributeMacro (int, NumberOfTargetBins) | |
| Number of histogram bins for target image intensities. | |
| mirtkPublicAttributeMacro (int, NumberOfSourceBins) | |
| Number of histogram bins for source image intensities. | |
| virtual ParameterList | Parameter () const |
| Get parameter key/value as string map. | |
| virtual void | Print (Indent=0) const |
| Print debug information. | |
| virtual void | Update (bool=true) |
| Update moving image and internal state of similarity measure. | |
| virtual void | WriteDataSets (const char *, const char *, bool=true) const |
| Write input of data fidelity term. | |
| Public Member Functions inherited from mirtk::ImageSimilarity | |
| void | CopyAttributes (const ImageSimilarity &) |
| Copy attributes of this class from another instance. | |
| bool | IsForeground (int) const |
| Whether to evaluate similarity at specified voxel. | |
| bool | IsForeground (int, int, int) const |
| Whether to evaluate similarity at specified voxel. | |
| mirtkAttributeMacro (bool, InitialUpdate) | |
| Whether Update has not been called since initialization. | |
| mirtkComponentMacro (GradientImageType, GradientWrtTarget) | |
| Memory for (non-parametric) similarity gradient w.r.t target transformation. | |
| mirtkComponentMacro (GradientImageType, GradientWrtSource) | |
| Memory for (non-parametric) similarity gradient w.r.t source transformation. | |
| mirtkComponentMacro (double, Gradient) | |
| Memory for (parametric) similarity gradient. | |
| mirtkLooseComponentMacro (RegisteredImage, Target) | |
| (Transformed) Target image | |
| mirtkLooseComponentMacro (RegisteredImage, Source) | |
| (Transformed) Source image | |
| mirtkPublicAggregateMacro (BinaryImage, Mask) | |
| mirtkPublicAttributeMacro (ImageAttributes, Domain) | |
| Finite regular domain on which to resample images and evaluate similarity. | |
| mirtkPublicAttributeMacro (ForegroundRegion, Foreground) | |
| Set operation used to define common foreground region of co-registered images. | |
| mirtkPublicAttributeMacro (int, NumberOfVoxels) | |
| Number of voxels per registered image. | |
| mirtkPublicAttributeMacro (bool, NormalizeImageGradient) | |
| Divide transformed image gradient by input intensity range. | |
| mirtkPublicAttributeMacro (bool, UseApproximateGradient) | |
| mirtkPublicAttributeMacro (double, VoxelWisePreconditioning) | |
| mirtkPublicAttributeMacro (double, NodeBasedPreconditioning) | |
| mirtkPublicAttributeMacro (bool, SkipTargetInitialization) | |
| Skip initialization of target image. | |
| mirtkPublicAttributeMacro (bool, SkipSourceInitialization) | |
| Skip initialization of source image. | |
| void | ReleaseSource () |
| Release input source image. | |
| void | ReleaseTarget () |
| Release input target image. | |
| virtual void | WriteGradient (const char *, const char *) const |
| Write gradient of data fidelity term w.r.t each transformed input. | |
| virtual | ~ImageSimilarity () |
| Destructor. | |
| Public Member Functions inherited from mirtk::DataFidelity | |
| virtual | ~DataFidelity () |
| Destructor. | |
| Public Member Functions inherited from mirtk::EnergyTerm | |
| virtual enum EnergyMeasure | EnergyMeasure () const =0 |
| Energy measure implemented by this term. | |
| void | Gradient (double *gradient, double step) |
| virtual void | GradientStep (const double *gradient, double &min, double &max) const |
| double | InitialValue () |
| Returns initial value of energy term. | |
| void | NormalizedGradient (double *gradient, double step) |
| string | Prefix (const char *=NULL) const |
| Prefix to be used for debug output files. | |
| double | RawValue () |
| void | ResetInitialValue () |
| Reset initial value of energy term. | |
| void | ResetValue () |
| Reset cached value of energy term. | |
| virtual bool | Upgrade () |
| Update energy term after convergence. | |
| double | Value () |
| Evaluate energy term. | |
| virtual | ~EnergyTerm () |
| Destructor. | |
| Public Member Functions inherited from mirtk::Configurable | |
| string | DefaultName () const |
| virtual bool | Set (const char *, const char *) |
| Set parameter value from string. | |
| virtual | ~Configurable () |
| Destructor. | |
| Public Member Functions inherited from mirtk::Observable | |
| void | AddObserver (Observer &) |
| Add observer. | |
| void | Broadcast (Event, const void *=NULL) |
| Broadcast event to observers. | |
| void | ClearObservers () |
| Delete all observers. | |
| void | DeleteObserver (Observer &) |
| Delete observer. | |
| void | NotifyObservers (Event, const void *=NULL) |
| Notify all observers about given event if this object has changed. | |
| int | NumberOfObservers () const |
| Number of current observers. | |
| virtual | ~Observable () |
| Destructor. | |
| Public Member Functions inherited from mirtk::Object | |
| virtual const char * | NameOfClass () const =0 |
| Get name of class, which this object is an instance of. | |
| bool | Parameter (const ParameterList &) |
| Set parameters from name/value pairs. | |
| virtual | ~Object () |
| Destructor. | |
Protected Member Functions | |
| virtual double | Evaluate () |
| Evaluate similarity of images. | |
| Protected Member Functions inherited from mirtk::HistogramImageSimilarity | |
| HistogramImageSimilarity (const char *="", double=1.0) | |
| Constructor. | |
| HistogramImageSimilarity (const HistogramImageSimilarity &) | |
| Copy constructor. | |
| HistogramImageSimilarity & | operator= (const HistogramImageSimilarity &) |
| Assignment operator. | |
| virtual bool | SetWithPrefix (const char *, const char *) |
| Set parameter value from string. | |
| virtual void | UpdateHistogram () |
| Update estimated joint histogram after raw samples histogram has changed. | |
| virtual | ~HistogramImageSimilarity () |
| Destructor. | |
| Protected Member Functions inherited from mirtk::ImageSimilarity | |
| void | ApproximateGradient (RegisteredImage *image, FreeFormTransformation *ffd, double *gradient, double step, double weight) |
| void | ApproximateGradient (RegisteredImage *image, double *gradient, double step, double weight) |
| virtual void | EvaluateGradient (RegisteredImage *image, GradientImageType *&np_gradient, double *gradient, double step, double weight) |
| virtual void | EvaluateGradient (double *gradient, double step, double weight) |
| ImageSimilarity (const char *="", double=1.0) | |
| Constructor. | |
| ImageSimilarity (const ImageSimilarity &) | |
| Copy constructor. | |
| virtual void | InitializeInput (const ImageAttributes &domain) |
| void | MultiplyByImageGradient (const RegisteredImage *image, GradientImageType *gradient) |
| virtual bool | NonParametricGradient (const RegisteredImage *image, GradientImageType *gradient) |
| virtual void | NormalizeGradient (GradientImageType *gradient) |
| virtual void | NormalizeGradient (const RegisteredImage *image, double *gradient) |
| ImageSimilarity & | operator= (const ImageSimilarity &) |
| Assignment operator. | |
| virtual void | ParametricGradient (const RegisteredImage *image, GradientImageType *np_gradient, double *gradient, double weight) |
| virtual bool | SetWithoutPrefix (const char *, const char *) |
| Set parameter value from string. | |
| Protected Member Functions inherited from mirtk::DataFidelity | |
| DataFidelity (const char *="", double=1.0) | |
| Constructor. | |
| DataFidelity (const DataFidelity &) | |
| Copy constructor. | |
| DataFidelity & | operator= (const DataFidelity &) |
| Assignment operator. | |
| Protected Member Functions inherited from mirtk::EnergyTerm | |
| EnergyTerm (const char *="", double=1.0) | |
| Constructor. | |
| EnergyTerm (const EnergyTerm &) | |
| Copy constructor. | |
| EnergyTerm & | operator= (const EnergyTerm &) |
| Assignment operator. | |
| Protected Member Functions inherited from mirtk::Configurable | |
| Configurable (const char *="") | |
| Constructor. | |
| Configurable (const Configurable &) | |
| Copy constructor. | |
| string | DefaultPrefix () const |
| Get default object name prefix (if any) | |
| bool | HasName () const |
| Whether this object has an explicit name. | |
| bool | HasPrefix () const |
| Whether this object has either an explicit name or default prefix. | |
| template<class T > | |
| bool | InsertWithPrefix (ParameterList &, string, T) const |
| Insert parameter into name/value list with object name prefix. | |
| bool | InsertWithPrefix (ParameterList &, const ParameterList &) const |
| Insert parameters into name/value list with object name prefix. | |
| Configurable & | operator= (const Configurable &) |
| Assignment operator. | |
| string | ParameterNameWithoutPrefix (const char *) const |
| Get name of parameter without object name prefix. | |
| string | ParameterNameWithPrefix (const string &) const |
| Get name of parameter with default object name prefix. | |
| string | ParameterNameWithPrefix (const char *) const |
| Get name of parameter with default object name prefix. | |
| Protected Member Functions inherited from mirtk::Observable | |
| Observable () | |
| Default constructor. | |
| Observable (const Observable &) | |
| Copy constructor. | |
| Observable & | operator= (const Observable &) |
| Assignment operator. | |
| Protected Member Functions inherited from mirtk::Object | |
| template<typename... Args> | |
| void | Throw (ErrorType err, const char *func, Args... args) const |
Additional Inherited Members | |
| Public Types inherited from mirtk::HistogramImageSimilarity | |
| typedef double | BinType |
| Type of joint histogram bin values. | |
| typedef Histogram2D< BinType > | JointHistogramType |
| Type of joint histogram. | |
| Public Types inherited from mirtk::ImageSimilarity | |
| enum | ForegroundRegion { FG_Domain, FG_Mask, FG_Target, FG_Overlap, FG_Union } |
| typedef GenericImage< GradientType > | GradientImageType |
| Type of similarity gradient image. | |
| typedef double | GradientType |
| Type of similarity gradient components. | |
| typedef RegisteredImage::VoxelType | VoxelType |
| Voxel type of registered images. | |
| Public Types inherited from mirtk::EnergyTerm | |
| typedef ObjectFactory< enum EnergyMeasure, EnergyTerm > | FactoryType |
| Type of energy term factory. | |
| Static Public Member Functions inherited from mirtk::HistogramImageSimilarity | |
| static int | DefaultNumberOfBins (const BaseImage *image, double min_intensity=NaN, double max_intensity=NaN) |
| Static Public Member Functions inherited from mirtk::ImageSimilarity | |
| static ImageSimilarity * | New (SimilarityMeasure, const char *="", double=1.0) |
| Instantiate specified similarity measure. | |
| Static Public Member Functions inherited from mirtk::EnergyTerm | |
| static FactoryType & | Factory () |
| Get global energy term factory instance. | |
| static EnergyTerm * | New (EnergyMeasure, const char *="", double=1.0) |
| Construct new energy term. | |
| static EnergyTerm * | TryNew (EnergyMeasure, const char *="", double=1.0) |
| Construct new energy term or return nullptr if term not available. | |
| Static Public Member Functions inherited from mirtk::Object | |
| static const char * | NameOfType () |
| Get name of this class type. | |
| Static Protected Member Functions inherited from mirtk::Object | |
| template<typename... Args> | |
| static void | ThrowStatic (ErrorType err, const char *cls, const char *func, Args... args) |
Detailed Description
Joint entropy image similarity measure
Definition at line 32 of file ImageCovariance.h.
Member Function Documentation
§ RawValue()
|
virtual |
Return unweighted and unnormalized raw energy term value
- Remarks
- Use for progress reporting only.
Reimplemented from mirtk::EnergyTerm.
The documentation for this class was generated from the following file: