#include <GaussianInterpolateImageFunction3D.h>

Inheritance diagram for mirtk::GenericGaussianInterpolateImageFunction3D< TImage >:

Collaboration diagram for mirtk::GenericGaussianInterpolateImageFunction3D< TImage >:

Public Member Functions
	GenericGaussianInterpolateImageFunction3D (double sigma=1.0)
	Default constructor.

VoxelType	Get (double, double, double, double=0) const

template<class TOtherImage >
TOtherImage::VoxelType	Get (const TOtherImage *, double, double, double, double=0) const

virtual VoxelType	GetInside (double, double, double, double=0) const

virtual VoxelType	GetOutside (double, double, double, double=0) const
	Evaluate generic image at an arbitrary location (in pixels)

VoxelType	GetWithPadding (double, double, double, double=0) const

template<class TOtherImage >
TOtherImage::VoxelType	GetWithPadding (const TOtherImage *, double, double, double, double=0) const

virtual VoxelType	GetWithPaddingInside (double, double, double, double=0) const

virtual VoxelType	GetWithPaddingOutside (double, double, double, double=0) const

Public Member Functions inherited from mirtk::GenericGaussianInterpolateImageFunction< TImage >
virtual void	BoundingBox (double, double, int &, int &, int &, int &) const
	Returns discrete boundaries of local 2D image region needed for interpolation.

virtual void	BoundingBox (double, double, double, int &, int &, int &, int &, int &, int &) const
	Returns discrete boundaries of local 3D image region needed for interpolation.

virtual void	BoundingBox (double, double, double, double, int &, int &, int &, int &, int &, int &, int &, int &) const
	Returns discrete boundaries of local 4D image region needed for interpolation.

virtual void	BoundingInterval (double, int &, int &) const

	GenericGaussianInterpolateImageFunction (double=1.0)
	Default constructor.

VoxelType	Get (double, double, double=0, double=0) const

template<class TOtherImage >
TOtherImage::VoxelType	Get (const TOtherImage *, double, double, double=0, double=0) const

VoxelType	Get2D (double, double, double=0, double=0) const

template<class TOtherImage >
TOtherImage::VoxelType	Get2D (const TOtherImage *, double, double, double=0, double=0) const

VoxelType	Get3D (double, double, double=0, double=0) const

template<class TOtherImage >
TOtherImage::VoxelType	Get3D (const TOtherImage *, double, double, double=0, double=0) const

VoxelType	Get4D (double, double, double=0, double=0) const

template<class TOtherImage >
TOtherImage::VoxelType	Get4D (const TOtherImage *, double, double, double=0, double=0) const

template<class TOtherImage >
TOtherImage::VoxelType	GetWithPadding (const TOtherImage *, double, double, double=0, double=0) const

VoxelType	GetWithPadding2D (double, double, double=0, double=0) const

template<class TOtherImage >
TOtherImage::VoxelType	GetWithPadding2D (const TOtherImage *, double, double, double=0, double=0) const

VoxelType	GetWithPadding3D (double, double, double=0, double=0) const

template<class TOtherImage >
TOtherImage::VoxelType	GetWithPadding3D (const TOtherImage *, double, double, double=0, double=0) const

VoxelType	GetWithPadding4D (double, double, double=0, double=0) const

template<class TOtherImage >
TOtherImage::VoxelType	GetWithPadding4D (const TOtherImage *, double, double, double=0, double=0) const

virtual void	Initialize (bool=false)
	Initialize interpolation function.

Public Member Functions inherited from mirtk::GenericInterpolateImageFunction< TImage >
virtual double	EvaluateInside (double, double, double=0, double=0) const

virtual void	EvaluateInside (double *, double, double, double=0, int=1) const

virtual void	EvaluateInside (Vector &, double, double, double=0, double=0) const

virtual double	EvaluateOutside (double, double, double=0, double=0) const
	Evaluate scalar image at an arbitrary location (in pixels)

virtual void	EvaluateOutside (double *, double, double, double=0, int=1) const
	Evaluate multi-channel image at an arbitrary location (in pixels)

virtual void	EvaluateOutside (Vector &, double, double, double=0, double=0) const
	Evaluate vector image at an arbitrary location (in pixels)

virtual double	EvaluateWithPaddingInside (double, double, double=0, double=0) const

virtual void	EvaluateWithPaddingInside (double *, double, double, double=0, int=1) const

virtual void	EvaluateWithPaddingInside (Vector &, double, double, double=0, double=0) const

virtual double	EvaluateWithPaddingOutside (double, double, double=0, double=0) const

virtual void	EvaluateWithPaddingOutside (double *, double, double, double=0, int=1) const

virtual void	EvaluateWithPaddingOutside (Vector &, double, double, double=0, double=0) const

virtual void	Extrapolator (ExtrapolateImageFunction *, bool=false)
	Set extrapolate image function for evaluation outside of image domain.

ExtrapolatorType *	Extrapolator ()

const ExtrapolatorType *	Extrapolator () const

VoxelType	Get (double, double, double=0, double=0) const

VoxelType	GetWithPadding (double, double, double=0, double=0) const

virtual void	Input (const BaseImage *)
	Set input image.

const ImageType *	Input () const
	Get input image.

virtual ExtrapolateImageFunction *	New (enum ExtrapolationMode, const BaseImage *=NULL)
	Construct extrapolator which is compatible with this interpolator.

VoxelType	operator() (double, double, double=0, double=0) const
	Evaluate generic image at an arbitrary location (in pixels)

virtual	~GenericInterpolateImageFunction ()
	Destructor.

Public Member Functions inherited from mirtk::InterpolateImageFunction
const ImageAttributes &	Attributes () const
	Lattice attributes.

double	Evaluate (double, double, double=0, double=0) const

double	Evaluate (const Point &, double=0) const

double	Evaluate (double, double, double=0, double=0)

void	Evaluate (double *, double, double, double=0, int=1) const

void	Evaluate (double *, const Point &, int=1) const

void	Evaluate (Vector &, double, double, double=0, double=0) const

template<class TVoxel >
void	Evaluate (GenericImage< TVoxel > &) const
	Evaluate image function at all locations of the output image.

void	EvaluateJacobian (Matrix &, double, double, double=0, double=NaN) const

virtual void	EvaluateJacobianInside (Matrix &, double, double, double=0, double=NaN) const

virtual void	EvaluateJacobianOutside (Matrix &, double, double, double=0, double=NaN) const

void	EvaluateJacobianWithPadding (Matrix &, double, double, double=0, double=NaN) const

virtual void	EvaluateJacobianWithPaddingInside (Matrix &, double, double, double=0, double=NaN) const

virtual void	EvaluateJacobianWithPaddingOutside (Matrix &, double, double, double=0, double=NaN) const

double	EvaluateWithPadding (double, double, double=0, double=0) const

void	EvaluateWithPadding (double *, double, double, double=0, int=1) const

void	EvaluateWithPadding (Vector &, double, double, double=0, double=0) const

enum ExtrapolationMode	ExtrapolationMode () const
	Get extrapolation mode used by this interpolator.

ExtrapolateImageFunction *	Extrapolator ()

const ExtrapolateImageFunction *	Extrapolator () const

void	ImageToWorld (double &, double &) const
	Convert image location (in pixels) to world coordinates (in mm)

void	ImageToWorld (double &, double &, double &) const
	Convert image location (in pixels) to world coordinates (in mm)

void	ImageToWorld (Point &) const
	Convert image location (in pixels) to world coordinates (in mm)

void	ImageToWorld (Vector3 &) const
	Convert image vector (in pixels) to world coordinates (in mm)

virtual void	Initialize ()

void	Input (const BaseImage *)
	Set input image.

const BaseImage *	Input () const
	Get input image.

void	Inside (double &, double &, double &, double &) const

void	Inside (double &, double &, double &, double &, double &, double &) const

void	Inside (double &, double &, double &, double &, double &, double &, double &, double &) const

virtual enum InterpolationMode	InterpolationMode () const =0
	Get interpolation mode corresponding to this interpolator.

bool	IsForeground (double, double) const

bool	IsForeground (double, double, double) const

bool	IsForeground (double, double, double, double) const

bool	IsForeground (const Point &) const

bool	IsForeground (const Point &, double) const

bool	IsInside (double, double) const

bool	IsInside (double, double, double) const

bool	IsInside (double, double, double, double) const

bool	IsInside (const Point &) const

bool	IsInside (const Point &, double) const

bool	IsOutside (double, double) const

bool	IsOutside (double, double, double) const

bool	IsOutside (double, double, double, double) const

bool	IsOutside (const Point &) const

bool	IsOutside (const Point &, double) const

int	T () const
	Image size along t axis.

double	TSize () const
	Image spacing along t axis.

virtual void	Update ()

void	WorldToImage (double &, double &) const
	Convert world coordinates (in mm) to image location (in pixels)

void	WorldToImage (double &, double &, double &) const
	Convert world coordinates (in mm) to image location (in pixels)

void	WorldToImage (Point &) const
	Convert world coordinates (in mm) to image location (in pixels)

void	WorldToImage (Vector3 &) const
	Convert world coordinates vector (in mm) to image vector (in pixels)

int	X () const
	Image size along x axis.

double	XSize () const
	Image spacing along x axis.

int	Y () const
	Image size along y axis.

double	YSize () const
	Image spacing along y axis.

int	Z () const
	Image size along z axis.

double	ZSize () const
	Image spacing along z axis.

virtual	~InterpolateImageFunction ()
	Destructor.

Public Member Functions inherited from mirtk::ImageFunction
virtual	~ImageFunction ()
	Destructor.

Public Member Functions inherited from mirtk::Object
virtual const char *	NameOfClass () const =0
	Get name of class, which this object is an instance of.

virtual ParameterList	Parameter () const
	Get parameter name/value pairs.

bool	Parameter (const ParameterList &)
	Set parameters from name/value pairs.

virtual bool	Set (const char name, const char value)

virtual	~Object ()
	Destructor.

Additional Inherited Members
Static Public Member Functions inherited from mirtk::GenericInterpolateImageFunction< TImage >
static GenericInterpolateImageFunction *	New (enum InterpolationMode=Interpolation_Default, const TImage *=NULL)
	Construct interpolator with default infinite extension of input image.

static GenericInterpolateImageFunction *	New (enum InterpolationMode, enum ExtrapolationMode, const TImage *=NULL)

Static Public Member Functions inherited from mirtk::InterpolateImageFunction
static InterpolateImageFunction *	New (enum InterpolationMode=Interpolation_Default, const BaseImage *=NULL)
	Construct interpolator with default infinite extension of input image.

static InterpolateImageFunction *	New (enum InterpolationMode, enum ExtrapolationMode, const BaseImage *=NULL)

Static Public Member Functions inherited from mirtk::Object
static const char *	NameOfType ()
	Get name of this class type.

Protected Member Functions inherited from mirtk::GenericInterpolateImageFunction< TImage >
	GenericInterpolateImageFunction ()
	Default constructor.

Protected Member Functions inherited from mirtk::InterpolateImageFunction
	InterpolateImageFunction ()
	Default constructor.

Protected Member Functions inherited from mirtk::ImageFunction
	ImageFunction ()
	Default constructor.

	ImageFunction (const ImageFunction &)
	Copy constructor.

Protected Member Functions inherited from mirtk::Object
template<typename... Args>
void	Throw (ErrorType err, const char *func, Args... args) const

Static Protected Member Functions inherited from mirtk::Object
template<typename... Args>
static void	ThrowStatic (ErrorType err, const char cls, const char func, Args... args)

Protected Attributes inherited from mirtk::GenericGaussianInterpolateImageFunction< TImage >
double	_dx
	Voxel size of input image.

double	_RadiusT
	Filter radius in t dimension.

double	_RadiusX
	Filter radius in x dimension.

double	_RadiusY
	Filter radius in y dimension.

double	_RadiusZ
	Filter radius in z dimension.

Protected Attributes inherited from mirtk::InterpolateImageFunction
ExtrapolateImageFunction *	_InfiniteInput

bool	_InfiniteInputOwner
	Whether infinite discrete image was instantiated by this image function.

double	_x1

Detailed Description

template<class TImage>
class mirtk::GenericGaussianInterpolateImageFunction3D< TImage >

Gaussian interpolation of generic 3D image

Definition at line 34 of file GaussianInterpolateImageFunction3D.h.

Member Function Documentation

§ Get() [1/2]

template<class TImage >

GenericGaussianInterpolateImageFunction3D< TImage >::VoxelType mirtk::GenericGaussianInterpolateImageFunction3D< TImage >::Get	(	double	x,
		double	y,
		double	z,
		double	t = `0`
	)		const

inline

Get value of given image at arbitrary location (in pixels)

This function is used to interpolate the image value at arbitrary locations when no extrapolator was set.

Definition at line 45 of file GaussianInterpolateImageFunction3D.hxx.

§ Get() [2/2]

template<class TImage >

template<class TOtherImage >

TOtherImage::VoxelType mirtk::GenericGaussianInterpolateImageFunction3D< TImage >::Get	(	const TOtherImage *	input,
		double	x,
		double	y,
		double	z,
		double	t = `0`
	)		const

inline

Get value of given image at arbitrary location (in pixels)

If the location is inside the finite domain of the image, an actual image instance can be passed as first argument directly such as an instance of GenericImage. Otherwise, an image function which extends the finite image domain to an infinite lattice is needed, i.e., an instance of a subclass of ExtrapolateImageFunction.

Definition at line 63 of file GaussianInterpolateImageFunction3D.hxx.

§ GetInside()

template<class TImage >

GenericGaussianInterpolateImageFunction3D< TImage >::VoxelType mirtk::GenericGaussianInterpolateImageFunction3D< TImage >::GetInside	(	double	x,
		double	y,
		double	z,
		double	t = `0`
	)		const

inlinevirtual

Evaluate generic image without handling boundary conditions

This version is faster than EvaluateOutside, but is only defined inside the domain for which all image values required for interpolation are defined and thus require no extrapolation of the finite image.

Reimplemented from mirtk::GenericGaussianInterpolateImageFunction< TImage >.

Definition at line 81 of file GaussianInterpolateImageFunction3D.hxx.

§ GetWithPadding() [1/2]

template<class TImage >

GenericGaussianInterpolateImageFunction3D< TImage >::VoxelType mirtk::GenericGaussianInterpolateImageFunction3D< TImage >::GetWithPadding	(	double	x,
		double	y,
		double	z,
		double	t = `0`
	)		const

inlinevirtual

Get value of given image at arbitrary location (in pixels)

This function is used to only interpolate foreground image values. If fully outside the foreground region, the _DefaultValue is returned.

Reimplemented from mirtk::GenericGaussianInterpolateImageFunction< TImage >.

Definition at line 54 of file GaussianInterpolateImageFunction3D.hxx.

§ GetWithPadding() [2/2]

template<class TImage >

template<class TOtherImage >

TOtherImage::VoxelType mirtk::GenericGaussianInterpolateImageFunction3D< TImage >::GetWithPadding	(	const TOtherImage *	input,
		double	x,
		double	y,
		double	z,
		double	t = `0`
	)		const

inline

Get value of given image at arbitrary location (in pixels)

This function is used to only interpolate foreground image values. If fully outside the foreground region, the _DefaultValue is returned.

If the location is inside the finite domain of the image, an actual image instance can be passed as first argument directly such as an instance of GenericImage. Otherwise, an image function which extends the finite image domain to an infinite lattice is needed, i.e., an instance of a subclass of ExtrapolateImageFunction.

Definition at line 72 of file GaussianInterpolateImageFunction3D.hxx.

§ GetWithPaddingInside()

template<class TImage >

GenericGaussianInterpolateImageFunction3D< TImage >::VoxelType mirtk::GenericGaussianInterpolateImageFunction3D< TImage >::GetWithPaddingInside	(	double	x,
		double	y,
		double	z,
		double	t = `0`
	)		const

inlinevirtual

Evaluate generic image without handling boundary conditions

If the location is partially inside the foreground region of the image, only the foreground values are interpolated. Otherwise, the _DefaultValue is returned.

This version is faster than GetWithPaddingOutside, but is only defined inside the domain for which all image values required for interpolation are defined and thus require no extrapolation of the finite image.

Reimplemented from mirtk::GenericGaussianInterpolateImageFunction< TImage >.

Definition at line 103 of file GaussianInterpolateImageFunction3D.hxx.

§ GetWithPaddingOutside()

template<class TImage >

GenericGaussianInterpolateImageFunction3D< TImage >::VoxelType mirtk::GenericGaussianInterpolateImageFunction3D< TImage >::GetWithPaddingOutside	(	double	x,
		double	y,
		double	z,
		double	t = `0`
	)		const

inlinevirtual

Evaluate generic image at an arbitrary location (in pixels)

If the location is partially inside the foreground region of the image, only the foreground values are interpolated. Otherwise, the _DefaultValue is returned.

Reimplemented from mirtk::GenericGaussianInterpolateImageFunction< TImage >.

Definition at line 112 of file GaussianInterpolateImageFunction3D.hxx.

The documentation for this class was generated from the following files:

Public Member Functions

Additional Inherited Members

Detailed Description

template<class TImage> class mirtk::GenericGaussianInterpolateImageFunction3D< TImage >

Member Function Documentation

§ Get() [1/2]

§ Get() [2/2]

§ GetInside()

§ GetWithPadding() [1/2]

§ GetWithPadding() [2/2]

§ GetWithPaddingInside()

§ GetWithPaddingOutside()

template<class TImage>
class mirtk::GenericGaussianInterpolateImageFunction3D< TImage >