#include <SimilarityTransformation.h>
Inheritance diagram for mirtk::SimilarityTransformation:
Collaboration diagram for mirtk::SimilarityTransformation:
Public Member Functions | |
| virtual void | ApproximateDOFs (const double *, const double *, const double *, const double *, const double *, const double *, const double *, int) |
| virtual bool | CanRead (TransformationType) const |
| Whether this transformation can read a file of specified type (i.e. format) | |
| virtual bool | CopyFrom (const Transformation *) |
| virtual void | DeriveJacobianWrtDOF (Matrix &, int, double, double, double, double=0, double=-1) const |
| Calculates the derivative of the Jacobian of the transformation (w.r.t. world coordinates) w.r.t. a transformation parameter. | |
| virtual double | GetScale () const |
| Gets scaling factor. | |
| virtual void | JacobianDOFs (double [3], int, double, double, double, double=0, double=-1) const |
| Calculates the Jacobian of the transformation w.r.t the parameters. | |
| virtual void | Print (ostream &, Indent=0) const |
| Prints the parameters of the transformation. | |
| virtual void | PutScale (double) |
| Puts scaling factor. | |
| SimilarityTransformation () | |
| Default constructor. | |
| SimilarityTransformation (const RigidTransformation &) | |
| Copy constructor. | |
| SimilarityTransformation (const SimilarityTransformation &) | |
| Copy constructor. | |
| virtual Cofstream & | Write (Cofstream &) const |
| Writes transformation to a file stream. | |
| virtual | ~SimilarityTransformation () |
| Destructor. | |
 Public Member Functions inherited from mirtk::RigidTransformation | |
| double | GetRotationX () const |
| Gets rotation angle around the x-axis. | |
| double | GetRotationY () const |
| Gets rotation angle around the y-axis. | |
| double | GetRotationZ () const |
| Gets rotation angle around the z-axis. | |
| double | GetTranslationX () const |
| Gets translation along the x-axis. | |
| double | GetTranslationY () const |
| Gets translation along the y-axis. | |
| double | GetTranslationZ () const |
| Gets translation along the z-axis. | |
| void | PutRotationX (double) |
| Puts rotation angle around the x-axis (transformation matrix is updated) | |
| void | PutRotationY (double) |
| Puts rotation angle around the y-axis (transformation matrix is updated) | |
| void | PutRotationZ (double) |
| Puts rotation angle around the z-axis (transformation matrix is updated) | |
| void | PutTranslationX (double) |
| Puts translation along the x-axis (transformation matrix is updated) | |
| void | PutTranslationY (double) |
| Puts translation along the y-axis (transformation matrix is updated) | |
| void | PutTranslationZ (double) |
| Puts translation along the z-axis (transformation matrix is updated) | |
| RigidTransformation () | |
| Default constructor. | |
| RigidTransformation (const RigidTransformation &) | |
| Copy constructor. | |
| virtual void | Rotate (double &x, double &y, double &z) const |
| Transforms a single point by the rotation part of the rigid transformation. | |
| void | SetParameters (double *params) |
| virtual void | Translate (double &x, double &y, double &z) const |
| Transforms a single point by the translation part of the rigid transformation. | |
| virtual | ~RigidTransformation () |
| Destructor. | |
| Public Member Functions inherited from mirtk::HomogeneousTransformation | |
| virtual void | Add (const DOFValue *) |
| virtual double | Approximate (const ImageAttributes &, double *, double *, double *, int=1, double=.0) |
| virtual double | Approximate (const double *, const double *, const double *, double *, double *, double *, int, int=1, double=.0) |
| virtual double | Approximate (const double *, const double *, const double *, const double *, double *, double *, double *, int, int=1, double=.0) |
| virtual double | Approximate (const Matrix &) |
| Approximate given homogeneous coordinate transformation matrix. | |
| virtual double | ApproximateAsNew (const Matrix &) |
| Approximate given homogeneous coordinate transformation matrix. | |
| const Matrix & | GetInverseMatrix () const |
| Gets the inverse transformation matrix. | |
| const Matrix & | GetMatrix () const |
| Gets the transformation matrix. | |
| virtual void | GlobalInverse (double &, double &, double &, double=0, double=-1) const |
| Transforms a single point using the inverse of the global transformation only. | |
| virtual void | GlobalJacobian (Matrix &, double, double, double, double=0, double=-1) const |
| Calculates the Jacobian of the global transformation w.r.t world coordinates. | |
| virtual void | GlobalTransform (double &, double &, double &, double=0, double=-1) const |
| Transforms a single point using the global transformation component only. | |
| HomogeneousTransformation () | |
| Default constructor. | |
| HomogeneousTransformation (const Matrix &) | |
| Construct from 4x4 transformation matrix (without checks) | |
| HomogeneousTransformation (const HomogeneousTransformation &) | |
| Copy Constructor. | |
| virtual bool | Inverse (double &, double &, double &, double=0, double=-1) const |
| Transforms a single point using the inverse of the transformation. | |
| void | Invert () |
| Inverts the transformation. | |
| virtual bool | IsIdentity () const |
| Checks whether transformation is an identity mapping. | |
| virtual void | Jacobian (Matrix &, double, double, double, double=0, double=-1) const |
| Calculates the Jacobian of the transformation w.r.t world coordinates. | |
| virtual bool | LocalInverse (double &, double &, double &, double=0, double=-1) const |
| Transforms a single point using the inverse of the local transformation only. | |
| virtual void | LocalJacobian (Matrix &, double, double, double, double=0, double=-1) const |
| Calculates the Jacobian of the local transformation w.r.t world coordinates. | |
| virtual void | LocalTransform (double &, double &, double &, double=0, double=-1) const |
| Transforms a single point using the local transformation component only. | |
| virtual void | Put (int, DOFValue) |
| Puts a transformation parameter. | |
| virtual void | Put (const DOFValue *) |
| Puts transformation parameters. | |
| void | PutMatrix (const Matrix &) |
| virtual void | Reset () |
| Reset transformation. | |
| virtual void | Transform (double &, double &, double &, double=0, double=-1) const |
| Transforms a single point. | |
| virtual double | Update (const DOFValue *) |
| void | UpdateParameter () |
| virtual | ~HomogeneousTransformation () |
| Destructor. | |
| Public Member Functions inherited from mirtk::Transformation | |
| virtual double | Approximate (const ImageAttributes &, const Transformation *, int=1, double=.0) |
| Approximate another transformation and return approximation error. | |
| virtual double | Approximate (GenericImage< double > &, int=1, double=.0) |
| virtual double | ApproximateAsNew (const ImageAttributes &, const Transformation *, int=1, double=.0) |
| Approximate another transformation and return approximation error. | |
| virtual double | ApproximateAsNew (GenericImage< double > &, int=1, double=.0) |
| virtual double | ApproximateAsNew (const ImageAttributes &, double *, double *, double *, int=1, double=.0) |
| virtual double | ApproximateAsNew (const double *, const double *, const double *, double *, double *, double *, int, int=1, double=.0) |
| virtual double | ApproximateAsNew (const double *, const double *, const double *, const double *, double *, double *, double *, int, int=1, double=.0) |
| virtual void | ApproximateDOFsGradient (const double *, const double *, const double *, const double *, const double *, const double *, const double *, int, double *, double=1.0) const |
| virtual void | ApproximateGradient (const ImageAttributes &, const double *, const double *, const double *, double *, double=1.0) const |
| virtual void | ApproximateGradient (const double *, const double *, const double *, const double *, const double *, const double *, int, double *, double=1.0) const |
| virtual void | ApproximateGradient (const double *, const double *, const double *, const double *, const double *, const double *, const double *, int, double *, double=1.0) const |
| virtual bool | CanModifyDisplacement (int=-1) const |
| virtual void | Displacement (double &, double &, double &, double=0, double=NaN) const |
| Calculates the displacement of a single point. | |
| virtual void | Displacement (const ImageAttributes &, double *, double *, double *) const |
| virtual void | Displacement (GenericImage< double > &, double=NaN, const WorldCoordsImage *=NULL) const |
| Calculates the displacement vectors for a whole image domain. | |
| virtual void | Displacement (GenericImage< float > &, double=NaN, const WorldCoordsImage *=NULL) const |
| Calculates the displacement vectors for a whole image domain. | |
| virtual void | Displacement (GenericImage< double > &, double, double, const WorldCoordsImage *=NULL) const |
| virtual void | Displacement (GenericImage< float > &, double, double, const WorldCoordsImage *=NULL) const |
| virtual void | DisplacementAfterDOFChange (int dof, double dv, GenericImage< double > &dx, double t, double t0=NaN, const WorldCoordsImage *i2w=NULL) const |
| virtual bool | DOFBoundingBox (const Image *, int, int &, int &, int &, int &, int &, int &, double=1) const |
| virtual double | DOFGradientNorm (const double *) const |
| Get norm of the gradient vector. | |
| double | EvaluateRMSError (const ImageAttributes &, const Transformation *) const |
| Evaluates RMS error of transformation compared to another. | |
| double | EvaluateRMSError (const ImageAttributes &, double *, double *) const |
| double | EvaluateRMSError (const ImageAttributes &, double *, double *, double *) const |
| double | EvaluateRMSError (const double *, const double *, const double *, double, double *, double *, double *, int no) const |
| Evaluates RMS error of transformation compared to displacement field. | |
| double | EvaluateRMSError (const double *, const double *, const double *, const double *, double *, double *, double *, int no) const |
| Evaluates RMS error of transformation compared to given displacement field. | |
| virtual double | Get (int) const |
| Get value of transformation parameter. | |
| virtual void | Get (DOFValue *) const |
| Get values of transformation parameters. | |
| virtual DOFStatus | GetStatus (int) const |
| Get status of transformation parameter. | |
| virtual void | GlobalDisplacement (double &, double &, double &, double=0, double=NaN) const |
| Calculates the displacement of a single point using the global transformation component only. | |
| virtual void | GlobalHessian (Matrix [3], double, double, double, double=0, double=NaN) const |
| Calculates the Hessian for each component of the global transformation w.r.t world coordinates. | |
| virtual void | GlobalInverseDisplacement (double &, double &, double &, double=0, double=NaN) const |
| Calculates the displacement of a single point using the inverse of the global transformation only. | |
| virtual double | GlobalJacobian (double, double, double, double=0, double=NaN) const |
| Calculates the determinant of the Jacobian of the global transformation w.r.t world coordinates. | |
| virtual bool | HasSameDOFsAs (const Transformation *) const |
| Checks whether transformation depends on the same vector of parameters. | |
| virtual void | Hessian (Matrix [3], double, double, double, double=0, double=NaN) const |
| Calculates the Hessian for each component of the transformation w.r.t world coordinates. | |
| virtual bool | Inverse (Point &, double=0, double=NaN) const |
| Transforms a single point using the inverse of the transformation. | |
| virtual int | Inverse (PointSet &, double=0, double=NaN) const |
| virtual bool | InverseDisplacement (double &, double &, double &, double=0, double=NaN) const |
| Calculates the displacement of a single point using the inverse of the transformation. | |
| virtual int | InverseDisplacement (const ImageAttributes &, double *, double *, double *) const |
| virtual int | InverseDisplacement (GenericImage< double > &, double=NaN, const WorldCoordsImage *=NULL) const |
| virtual int | InverseDisplacement (GenericImage< float > &, double=NaN, const WorldCoordsImage *=NULL) const |
| virtual int | InverseDisplacement (GenericImage< double > &, double, double, const WorldCoordsImage *=NULL) const |
| virtual int | InverseDisplacement (GenericImage< float > &, double, double, const WorldCoordsImage *=NULL) const |
| virtual double | Jacobian (double, double, double, double=0, double=NaN) const |
| Calculates the determinant of the Jacobian of the transformation w.r.t world coordinates. | |
| virtual void | LocalDisplacement (double &, double &, double &, double=0, double=NaN) const |
| Calculates the displacement of a single point using the local transformation component only. | |
| virtual void | LocalHessian (Matrix [3], double, double, double, double=0, double=NaN) const |
| Calculates the Hessian for each component of the local transformation w.r.t world coordinates. | |
| virtual bool | LocalInverseDisplacement (double &, double &, double &, double=0, double=NaN) const |
| Calculates the displacement of a single point using the inverse of the local transformation only. | |
| virtual double | LocalJacobian (double, double, double, double=0, double=NaN) const |
| Calculates the determinant of the Jacobian of the local transformation w.r.t world coordinates. | |
| int | NumberOfActiveDOFs () const |
| Get number of active transformation parameters. | |
| virtual int | NumberOfDOFs () const |
| Get number of transformation parameters. | |
| int | NumberOfPassiveDOFs () const |
| Get number of passive transformation parameters. | |
| virtual ParameterList | Parameter () const |
| Get (non-DoF) parameters as key/value as string map. | |
| virtual void | ParametricGradient (const GenericImage< double > *, double *, const WorldCoordsImage *, const WorldCoordsImage *, double=NaN, double=1) const |
| void | ParametricGradient (const GenericImage< double > *, double *, const WorldCoordsImage *, double=NaN, double=1) const |
| void | ParametricGradient (const GenericImage< double > *, double *, double=NaN, double=1) const |
| virtual void | ParametricGradient (const GenericImage< double > **, int, double *, const WorldCoordsImage *, const WorldCoordsImage *, const double *=NULL, double=1) const |
| void | ParametricGradient (const GenericImage< double > **, int, double *, const WorldCoordsImage *, const double *=NULL, double=1) const |
| void | ParametricGradient (const GenericImage< double > **, int, double *, const double *=NULL, double=1) const |
| virtual void | ParametricGradient (const PointSet &, const Vector3D< double > *, double *, double=0, double=NaN, double=1) const |
| void | Print (Indent=0) const |
| Prints information about the transformation. | |
| virtual void | PutStatus (int, DOFStatus) |
| Put status of transformation parameter. | |
| virtual void | Read (const char *) |
| Reads a transformation from a file. | |
| virtual Cifstream & | Read (Cifstream &) |
| Reads a transformation from a file stream. | |
| virtual bool | RequiresCachingOfDisplacements () const |
| virtual bool | Set (const char *, const char *) |
| Set named (non-DoF) parameter from value as string. | |
| virtual void | Transform (Point &, double=0, double=NaN) const |
| Transforms a single point. | |
| virtual void | Transform (PointSet &, double=0, double=NaN) const |
| Transforms a set of points. | |
| virtual void | Transform (int, double *, double *, double *, double=0, double=NaN) const |
| Transforms a set of points. | |
| virtual void | Transform (int, double *, double *, double *, const double *, double=NaN) const |
| Transforms a set of points. | |
| virtual void | Transform (WorldCoordsImage &, double=NaN) const |
| Transforms world coordinates of image voxels. | |
| virtual TransformationType | TypeOfClass () const |
| Returns type ID of the instantiated transformation class. | |
| virtual void | Verify () |
| virtual void | Write (const char *) const |
| Writes a transformation to a file. | |
| virtual | ~Transformation () |
| Default destructor. | |
| Public Member Functions inherited from mirtk::Observable | |
| void | AddObserver (Observer &) |
| Add observer. | |
| void | Broadcast (Event, const void *=NULL) |
| Broadcast event to observers. | |
| void | ClearObservers () |
| Delete all observers. | |
| void | DeleteObserver (Observer &) |
| Delete observer. | |
| void | NotifyObservers (Event, const void *=NULL) |
| Notify all observers about given event if this object has changed. | |
| int | NumberOfObservers () const |
| Number of current observers. | |
| virtual | ~Observable () |
| Destructor. | |
| Public Member Functions inherited from mirtk::Object | |
| virtual const char * | NameOfClass () const =0 |
| Get name of class, which this object is an instance of. | |
| bool | Parameter (const ParameterList &) |
| Set parameters from name/value pairs. | |
| virtual | ~Object () |
| Destructor. | |
Static Public Member Functions | |
| static Matrix | DOFs2Matrix (const double *) |
| Construct a matrix based on parameters passed in the array. | |
| Static Public Member Functions inherited from mirtk::RigidTransformation | |
| static Matrix | DOFs2Matrix (const double *) |
| Construct a matrix based on parameters passed in the array. | |
| static void | Matrix2DOFs (const Matrix &, double *) |
| Return an array with parameters corresponding to a given matrix. | |
| Static Public Member Functions inherited from mirtk::Transformation | |
| static bool | CheckHeader (const char *) |
| Whether magic number in header of given file. | |
| static Transformation * | New (TransformationType) |
| static Transformation * | New (const Transformation *) |
| static Transformation * | New (const char *) |
| static TransformationType | TypeOfClass (const char *) |
| Returns type ID corresponding to transformations of the named class. | |
| Static Public Member Functions inherited from mirtk::Object | |
| static const char * | NameOfType () |
| Get name of this class type. | |
Protected Member Functions | |
| virtual Cifstream & | ReadDOFs (Cifstream &, TransformationType) |
| Reads transformation from a file stream. | |
| SimilarityTransformation (int) | |
| Default constructor with given number of parameters. | |
| SimilarityTransformation (const RigidTransformation &, int) | |
| Copy constructor with given number of parameters. | |
| SimilarityTransformation (const SimilarityTransformation &, int) | |
| Copy constructor with given number of parameters. | |
| virtual void | UpdateDOFs () |
| Update transformation parameters after change of matrix. | |
| virtual void | UpdateMatrix () |
| Update transformation matrix after change of parameter. | |
| Protected Member Functions inherited from mirtk::RigidTransformation | |
| RigidTransformation (int) | |
| Default constructor with given number of parameters. | |
| RigidTransformation (const RigidTransformation &, int) | |
| Copy constructor with given number of parameters. | |
| void | UpdateRotationSineCosine () |
| Update cached sine and cosine of rotation angles. | |
| Protected Member Functions inherited from mirtk::HomogeneousTransformation | |
| HomogeneousTransformation (int) | |
| Default constructor with given number of parameters. | |
| HomogeneousTransformation (const HomogeneousTransformation &, int) | |
| Copy constructor with given number of parameters. | |
| void | Update (AttributeSelector) |
| Update transformation parameters and/or matrices. | |
| Protected Member Functions inherited from mirtk::Transformation | |
| void | InitializeDOFs (int) |
| Initialize transformation parameters. | |
| void | InitializeDOFs (const Transformation &, int=-1) |
| Copy transformation parameters (DoFs) and their status. | |
| Transformation (int=0) | |
| Default constructor. | |
| Transformation (const Transformation &) | |
| Copy constructor. | |
| Transformation (const Transformation &, int) | |
| Copy constructor. | |
| virtual Cofstream & | WriteDOFs (Cofstream &) const |
| Writes transformation parameters to a file stream. | |
| Protected Member Functions inherited from mirtk::Observable | |
| Observable () | |
| Default constructor. | |
| Observable (const Observable &) | |
| Copy constructor. | |
| Observable & | operator= (const Observable &) |
| Assignment operator. | |
| Protected Member Functions inherited from mirtk::Object | |
| template<typename... Args> | |
| void | Throw (ErrorType err, const char *func, Args... args) const |
Additional Inherited Members | |
| Public Types inherited from mirtk::Transformation | |
| typedef Status | DOFStatus |
| Type of transforamtion parameter status. | |
| typedef double | DOFValue |
| Type of transformation parameter value. | |
| Static Protected Member Functions inherited from mirtk::Object | |
| template<typename... Args> | |
| static void | ThrowStatic (ErrorType err, const char *cls, const char *func, Args... args) |
| Protected Attributes inherited from mirtk::RigidTransformation | |
| double | _cosrx |
| Cosine of rotation angle rx. | |
| double | _cosry |
| Cosine of rotation angle ry. | |
| double | _cosrz |
| Cosine of rotation angle rz. | |
| double | _sinrx |
| Sine of rotation angle rx. | |
| double | _sinry |
| Sine of rotation angle ry. | |
| double | _sinrz |
| Sine of rotation angle rz. | |
| Protected Attributes inherited from mirtk::HomogeneousTransformation | |
| Matrix | _inverse |
| Inverse 4x4 transformation matrix for homogeneous coordinates. | |
| Matrix | _matrix |
| 4x4 transformation matrix for homogeneous coordinates | |
| Protected Attributes inherited from mirtk::Transformation | |
| int | _NumberOfDOFs |
| Number of transformation parameters. | |
| DOFValue * | _Param |
| Value of each transformation parameter. | |
| DOFStatus * | _Status |
| Status of each transformation parameter (Active or Passive) | |
Detailed Description
Class for similarity transformations.
This class defines and implements similarity transformations. In addition to the rigid body transformation parameters, similarity transformations are parameterized by a global scaling parameter. The scaling parameter defines the scaling along all axis of the coordinate transformations.
Definition at line 37 of file SimilarityTransformation.h.
Member Function Documentation
§ ApproximateDOFs()
|
virtual |
Approximate displacements: This function takes a set of points and a set of displacements and finds !new! parameters such that the resulting transformation approximates the displacements as good as possible.
Reimplemented from mirtk::RigidTransformation.
Reimplemented in mirtk::AffineTransformation.
§ CopyFrom()
|
virtual |
Copy active transformation parameters (DoFs) from given transformation if possible and return false, otherwise
Reimplemented from mirtk::HomogeneousTransformation.
Reimplemented in mirtk::AffineTransformation.
The documentation for this class was generated from the following file: