#include <MultipleVoxelTransformation.h>
Public Member Functions | |
| void | ApplyDisplacement (const double *disp1) |
| void | ApplyDisplacementAndTransformation (const double *disp1) |
| void | ApplyDisplacements (const double *disp1, const double *disp2) |
| void | ApplyTransformation () |
| void | ApplyTransformations () |
| Transform using fluid composition of transformations. | |
| InterpolateImageFunction * | GetInterpolator (int n) |
| Get (casted) pointer to interpolator of type InterpolateImageFunction. | |
| InterpolateImageFunction * | GetInterpolator () |
| Get (casted) pointer to reference interpolator of type InterpolateImageFunction. | |
| void | InterpolatePut (int i, int j, int k, double *) |
| template<class OutputVoxelType > | |
| void | InterpolatePut (int i, int j, int k, OutputVoxelType *) |
| void | InterpolatePutAsDouble (int i, int j, int k) |
| template<class OutputVoxelType > | |
| void | InterpolateRescalePut (int i, int j, int k, OutputVoxelType *) |
| void | InterpolateRescalePutAsDouble (int i, int j, int k) |
| void | OutputToWorld (int i, int j, int k) |
| Convert output voxel indices to world coordinates. | |
| void | OutputToWorld (const double *i2w) |
| Convert output voxel indices to world coordinates given pointer to lookup table. | |
| template<class OutputVoxelType > | |
| void | PutOutsideValue (int i, int j, int k) |
| void | PutOutsideValueAsDouble (int i, int j, int k) |
| void | PutVoxelTransformation (int i, int j, int k, double *o2i) |
| Update map from output to input voxel indices with inside check. | |
| void | WorldToInput () |
| Convert world coordinates to input voxel indices. | |
| virtual | ~BaseTransform () |
| Destructor. | |
 Public Member Functions inherited from mirtk::MultipleVoxelTransformation::TransformData | |
| TransformData () | |
| Default constructor. | |
| Public Member Functions inherited from mirtk::MultipleVoxelTransformation::Base | |
| template<class T > | |
| T & | x_ (T *p) const |
| Get reference to x component of vector field. | |
| template<class T > | |
| const T & | x_ (const T *p) const |
| Get const reference to x component of vector field. | |
| template<class T > | |
| T & | y_ (T *p) const |
| Get reference to y component of vector field. | |
| template<class T > | |
| const T & | y_ (const T *p) const |
| Get const reference to y component of vector field. | |
| template<class T > | |
| T & | z_ (T *p) const |
| Get reference to z component of vector field. | |
| template<class T > | |
| const T & | z_ (const T *p) const |
| Get const reference to z component of vector field. | |
| Public Member Functions inherited from mirtk::VoxelFunction | |
| void | join (VoxelFunction &) |
| Join results. | |
| void | split (VoxelFunction &) |
| VoxelFunction () | |
| Default constructor. | |
Protected Member Functions | |
| BaseTransform (const TransformData &data) | |
| Constructor. | |
| BaseTransform (const BaseTransform &other) | |
| Copy constructor. | |
| Protected Member Functions inherited from mirtk::MultipleVoxelTransformation::Base | |
| Base (int numvox=0) | |
| Default constructor. | |
| Base (const Base &other) | |
| Copy constructor. | |
Additional Inherited Members | |
| Static Public Member Functions inherited from mirtk::VoxelFunction | |
| static bool | IsReduction () |
| Public Attributes inherited from mirtk::MultipleVoxelTransformation::TransformData | |
| int | _Begin |
| Index of first image to process. | |
| int | _End |
| Index of last image to process + 1. | |
| const BaseImage * | _Input |
| Single/reference input. | |
| const BaseImage ** | _Inputs |
| Input images. | |
| InterpolateImageFunction * | _Interpolator |
| Single/reference interpolator. | |
| InterpolateImageFunction ** | _Interpolators |
| Input interpolators. | |
| bool | _Invert |
| Whether to invert the transformations. | |
| BinaryImage * | _Mask |
| Output foreground mask. | |
| int | _MaxNumberOfComponents |
| Maximum number of image components/channels (_t) | |
| int | _NumberOfImages |
| Number of input images. | |
| double | _Offset |
| Output intensity offset. | |
| Image * | _Output |
| Single/reference output image. | |
| Image ** | _Outputs |
| Output images. | |
| double | _PaddingValue |
| Default padding value. | |
| double * | _PaddingValues |
| Outside padding values. | |
| double | _ScaleFactor |
| Output intensity scale factor. | |
| const Transformation * | _Transformation1 |
| First transformation. | |
| const Transformation * | _Transformation2 |
| Second transformation (optional) | |
| Public Attributes inherited from mirtk::VoxelFunction | |
| const ImageAttributes * | _Domain |
| Protected Attributes inherited from mirtk::MultipleVoxelTransformation::Base | |
| int | _NumberOfVoxels |
| Number of voxels per vector component. | |
| int | _TwiceNumberOfVoxels |
| Offset of z component. | |
Detailed Description
template<class InterpolateImageFunction = InterpolateImageFunction, class InputDomain = InterpolationDomain::Foreground>
struct mirtk::MultipleVoxelTransformation::BaseTransform< InterpolateImageFunction, InputDomain >
Base class for voxel transformation functions with various transformation methods
Using an explicit interpolate image function type helps the compiler to deduce which virtual methods are being called and thus inline the code for better performance. If the actual type of the interpolator is not known when instantiating this class, use the default InterpolateImageFunction base interpolate image function type.
Definition at line 156 of file MultipleVoxelTransformation.h.
Member Function Documentation
§ ApplyDisplacement()
|
inline |
Transform indices using single dense displacement field
Requires dense displacement field computed from _Transformation1 and ignores the second transformation, assuming it to be unused.
Definition at line 295 of file MultipleVoxelTransformation.h.
§ ApplyDisplacementAndTransformation()
|
inline |
Transform indices using fluid composition of dense displacement field and transformation
Requires dense displacement field computed from _Transformation1.
Definition at line 319 of file MultipleVoxelTransformation.h.
§ ApplyDisplacements()
|
inline |
Transform indices using additive composition of dense displacement fields
Requires dense displacement fields computed from _Transformation1 and _Transformation2.
Definition at line 332 of file MultipleVoxelTransformation.h.
§ ApplyTransformation()
|
inline |
Transform indices using single transformation
Ignores the second transformation assuming it to be unused.
Definition at line 284 of file MultipleVoxelTransformation.h.
§ InterpolatePut() [1/2]
|
inline |
Set outputs to interpolated input values
Most efficient implementation. Only applicable when all output images have double as scalar type and thus also no intensity rescaling is required.
Definition at line 424 of file MultipleVoxelTransformation.h.
§ InterpolatePut() [2/2]
|
inline |
Set outputs to interpolated input values
Slightly less efficient implementation. Applicable when all output images have a known unique scalar type and no intensity rescaling is used.
Definition at line 446 of file MultipleVoxelTransformation.h.
§ InterpolatePutAsDouble()
|
inline |
Set outputs to interpolated input values
Least efficient method without rescaling. Does not imply any particular output scalar type or interpolator type. In this case it is better to first store the voxel index transformation in the _Output2Input map and then update each output image separately.
Definition at line 473 of file MultipleVoxelTransformation.h.
§ InterpolateRescalePut()
|
inline |
Set outputs to interpolated and rescaled input values
Efficient and applicable when all output images have a known unique scalar type.
Definition at line 496 of file MultipleVoxelTransformation.h.
§ InterpolateRescalePutAsDouble()
|
inline |
Set outputs to interpolated and rescaled input values
Least efficient but most general interpolation method. Does not imply any particular output scalar type or interpolator type. In this case it is better, however, to first store the voxel index transformation in the _Output2Input map and then update each output image separately if the additional required memory is not an issue.
Definition at line 524 of file MultipleVoxelTransformation.h.
§ PutOutsideValue()
|
inline |
Set outputs to dedicated outside value
Efficient and applicable when all output images have a known unique scalar type.
Definition at line 388 of file MultipleVoxelTransformation.h.
§ PutOutsideValueAsDouble()
|
inline |
Set outputs to dedicated outside value
Less efficient than PutOutsideValue but can also be used when output images have not a known unique scalar type.
Definition at line 407 of file MultipleVoxelTransformation.h.
The documentation for this struct was generated from the following file: