Public Member Functions | List of all members
mirtk::IntensityCrossCorrelation Class Reference

#include <IntensityCrossCorrelation.h>

Inheritance diagram for mirtk::IntensityCrossCorrelation:
Inheritance graph
Collaboration diagram for mirtk::IntensityCrossCorrelation:
Collaboration graph

Public Member Functions

 IntensityCrossCorrelation (const char *="")
 Constructor.
 
 IntensityCrossCorrelation (const IntensityCrossCorrelation &)
 Copy constructor.
 
IntensityCrossCorrelationoperator= (const IntensityCrossCorrelation &)
 Assignment operator.
 
virtual ~IntensityCrossCorrelation ()
 Destructor.
 
- Public Member Functions inherited from mirtk::NormalizedIntensityCrossCorrelation
virtual void Exclude (const blocked_range3d< int > &)
 Exclude region from similarity evaluation.
 
virtual void Include (const blocked_range3d< int > &)
 Include region in similarity evaluation.
 
virtual void Initialize ()
 Initialize similarity measure once input and parameters have been set.
 
 NormalizedIntensityCrossCorrelation (const char *="")
 Constructor.
 
 NormalizedIntensityCrossCorrelation (const NormalizedIntensityCrossCorrelation &)
 Copy constructor.
 
NormalizedIntensityCrossCorrelationoperator= (const NormalizedIntensityCrossCorrelation &)
 Assignment operator.
 
virtual ParameterList Parameter () const
 Get parameter key/value as string map.
 
virtual void Print (Indent=0) const
 Print debug information.
 
virtual double RawValue (double) const
 
virtual void SetKernelToBoxWindow (double, double=-1, double=-1, Units=UNITS_MM)
 Set kernel to a box window with given radius.
 
virtual void SetKernelToGaussian (double, double=-1, double=-1, Units=UNITS_MM)
 Set kernel to a Gaussian with given standard deviation.
 
virtual void Update (bool=true)
 Update moving image and internal state of similarity measure.
 
virtual void WriteDataSets (const char *, const char *, bool=true) const
 Write input of data fidelity term.
 
 ~NormalizedIntensityCrossCorrelation ()
 Destructor.
 
- Public Member Functions inherited from mirtk::ImageSimilarity
void CopyAttributes (const ImageSimilarity &)
 Copy attributes of this class from another instance.
 
bool IsForeground (int) const
 Whether to evaluate similarity at specified voxel.
 
bool IsForeground (int, int, int) const
 Whether to evaluate similarity at specified voxel.
 
 mirtkAttributeMacro (bool, InitialUpdate)
 Whether Update has not been called since initialization.
 
 mirtkComponentMacro (GradientImageType, GradientWrtTarget)
 Memory for (non-parametric) similarity gradient w.r.t target transformation.
 
 mirtkComponentMacro (GradientImageType, GradientWrtSource)
 Memory for (non-parametric) similarity gradient w.r.t source transformation.
 
 mirtkComponentMacro (double, Gradient)
 Memory for (parametric) similarity gradient.
 
 mirtkLooseComponentMacro (RegisteredImage, Target)
 (Transformed) Target image
 
 mirtkLooseComponentMacro (RegisteredImage, Source)
 (Transformed) Source image
 
 mirtkPublicAggregateMacro (BinaryImage, Mask)
 
 mirtkPublicAttributeMacro (ImageAttributes, Domain)
 Finite regular domain on which to resample images and evaluate similarity.
 
 mirtkPublicAttributeMacro (ForegroundRegion, Foreground)
 Set operation used to define common foreground region of co-registered images.
 
 mirtkPublicAttributeMacro (int, NumberOfVoxels)
 Number of voxels per registered image.
 
 mirtkPublicAttributeMacro (bool, NormalizeImageGradient)
 Divide transformed image gradient by input intensity range.
 
 mirtkPublicAttributeMacro (bool, UseApproximateGradient)
 
 mirtkPublicAttributeMacro (double, VoxelWisePreconditioning)
 
 mirtkPublicAttributeMacro (double, NodeBasedPreconditioning)
 
 mirtkPublicAttributeMacro (bool, SkipTargetInitialization)
 Skip initialization of target image.
 
 mirtkPublicAttributeMacro (bool, SkipSourceInitialization)
 Skip initialization of source image.
 
void ReleaseSource ()
 Release input source image.
 
void ReleaseTarget ()
 Release input target image.
 
virtual void WriteGradient (const char *, const char *) const
 Write gradient of data fidelity term w.r.t each transformed input.
 
virtual ~ImageSimilarity ()
 Destructor.
 
- Public Member Functions inherited from mirtk::DataFidelity
virtual ~DataFidelity ()
 Destructor.
 
- Public Member Functions inherited from mirtk::EnergyTerm
virtual enum EnergyMeasure EnergyMeasure () const =0
 Energy measure implemented by this term.
 
void Gradient (double *gradient, double step)
 
virtual void GradientStep (const double *gradient, double &min, double &max) const
 
double InitialValue ()
 Returns initial value of energy term.
 
void NormalizedGradient (double *gradient, double step)
 
string Prefix (const char *=NULL) const
 Prefix to be used for debug output files.
 
double RawValue ()
 
void ResetInitialValue ()
 Reset initial value of energy term.
 
void ResetValue ()
 Reset cached value of energy term.
 
virtual bool Upgrade ()
 Update energy term after convergence.
 
double Value ()
 Evaluate energy term.
 
virtual ~EnergyTerm ()
 Destructor.
 
- Public Member Functions inherited from mirtk::Configurable
string DefaultName () const
 
virtual bool Set (const char *, const char *)
 Set parameter value from string.
 
virtual ~Configurable ()
 Destructor.
 
- Public Member Functions inherited from mirtk::Observable
void AddObserver (Observer &)
 Add observer.
 
void Broadcast (Event, const void *=NULL)
 Broadcast event to observers.
 
void ClearObservers ()
 Delete all observers.
 
void DeleteObserver (Observer &)
 Delete observer.
 
void NotifyObservers (Event, const void *=NULL)
 Notify all observers about given event if this object has changed.
 
int NumberOfObservers () const
 Number of current observers.
 
virtual ~Observable ()
 Destructor.
 
- Public Member Functions inherited from mirtk::Object
virtual const char * NameOfClass () const =0
 Get name of class, which this object is an instance of.
 
bool Parameter (const ParameterList &)
 Set parameters from name/value pairs.
 
virtual ~Object ()
 Destructor.
 

Additional Inherited Members

- Public Types inherited from mirtk::NormalizedIntensityCrossCorrelation
enum  Units
 Enumeration of local window size units.
 
- Public Types inherited from mirtk::ImageSimilarity
enum  ForegroundRegion {
  FG_Domain, FG_Mask, FG_Target, FG_Overlap,
  FG_Union
}
 
typedef GenericImage< GradientTypeGradientImageType
 Type of similarity gradient image.
 
typedef double GradientType
 Type of similarity gradient components.
 
typedef RegisteredImage::VoxelType VoxelType
 Voxel type of registered images.
 
- Public Types inherited from mirtk::EnergyTerm
typedef ObjectFactory< enum EnergyMeasure, EnergyTermFactoryType
 Type of energy term factory.
 
- Static Public Member Functions inherited from mirtk::ImageSimilarity
static ImageSimilarityNew (SimilarityMeasure, const char *="", double=1.0)
 Instantiate specified similarity measure.
 
- Static Public Member Functions inherited from mirtk::EnergyTerm
static FactoryTypeFactory ()
 Get global energy term factory instance.
 
static EnergyTermNew (EnergyMeasure, const char *="", double=1.0)
 Construct new energy term.
 
static EnergyTermTryNew (EnergyMeasure, const char *="", double=1.0)
 Construct new energy term or return nullptr if term not available.
 
- Static Public Member Functions inherited from mirtk::Object
static const char * NameOfType ()
 Get name of this class type.
 
- Protected Member Functions inherited from mirtk::NormalizedIntensityCrossCorrelation
virtual void ComputeStatistics (const blocked_range3d< int > &, const RegisteredImage *, RealImage *, RealImage *)
 Compute statistics of local intensity distribution.
 
virtual void ComputeWeightedAverage (const blocked_range3d< int > &, RealImage *)
 Convolve image with separable window kernel.
 
virtual double Evaluate ()
 Evaluate similarity of images.
 
virtual bool NonParametricGradient (const RegisteredImage *, GradientImageType *)
 Evaluate non-parametric similarity gradient w.r.t the given image.
 
virtual bool SetWithPrefix (const char *, const char *)
 Set parameter value from string.
 
- Protected Member Functions inherited from mirtk::ImageSimilarity
void ApproximateGradient (RegisteredImage *image, FreeFormTransformation *ffd, double *gradient, double step, double weight)
 
void ApproximateGradient (RegisteredImage *image, double *gradient, double step, double weight)
 
virtual void EvaluateGradient (RegisteredImage *image, GradientImageType *&np_gradient, double *gradient, double step, double weight)
 
virtual void EvaluateGradient (double *gradient, double step, double weight)
 
 ImageSimilarity (const char *="", double=1.0)
 Constructor.
 
 ImageSimilarity (const ImageSimilarity &)
 Copy constructor.
 
virtual void InitializeInput (const ImageAttributes &domain)
 
void MultiplyByImageGradient (const RegisteredImage *image, GradientImageType *gradient)
 
virtual void NormalizeGradient (GradientImageType *gradient)
 
virtual void NormalizeGradient (const RegisteredImage *image, double *gradient)
 
ImageSimilarityoperator= (const ImageSimilarity &)
 Assignment operator.
 
virtual void ParametricGradient (const RegisteredImage *image, GradientImageType *np_gradient, double *gradient, double weight)
 
virtual bool SetWithoutPrefix (const char *, const char *)
 Set parameter value from string.
 
- Protected Member Functions inherited from mirtk::DataFidelity
 DataFidelity (const char *="", double=1.0)
 Constructor.
 
 DataFidelity (const DataFidelity &)
 Copy constructor.
 
DataFidelityoperator= (const DataFidelity &)
 Assignment operator.
 
- Protected Member Functions inherited from mirtk::EnergyTerm
 EnergyTerm (const char *="", double=1.0)
 Constructor.
 
 EnergyTerm (const EnergyTerm &)
 Copy constructor.
 
EnergyTermoperator= (const EnergyTerm &)
 Assignment operator.
 
- Protected Member Functions inherited from mirtk::Configurable
 Configurable (const char *="")
 Constructor.
 
 Configurable (const Configurable &)
 Copy constructor.
 
string DefaultPrefix () const
 Get default object name prefix (if any)
 
bool HasName () const
 Whether this object has an explicit name.
 
bool HasPrefix () const
 Whether this object has either an explicit name or default prefix.
 
template<class T >
bool InsertWithPrefix (ParameterList &, string, T) const
 Insert parameter into name/value list with object name prefix.
 
bool InsertWithPrefix (ParameterList &, const ParameterList &) const
 Insert parameters into name/value list with object name prefix.
 
Configurableoperator= (const Configurable &)
 Assignment operator.
 
string ParameterNameWithoutPrefix (const char *) const
 Get name of parameter without object name prefix.
 
string ParameterNameWithPrefix (const string &) const
 Get name of parameter with default object name prefix.
 
string ParameterNameWithPrefix (const char *) const
 Get name of parameter with default object name prefix.
 
- Protected Member Functions inherited from mirtk::Observable
 Observable ()
 Default constructor.
 
 Observable (const Observable &)
 Copy constructor.
 
Observableoperator= (const Observable &)
 Assignment operator.
 
- Protected Member Functions inherited from mirtk::Object
template<typename... Args>
void Throw (ErrorType err, const char *func, Args... args) const
 
- Static Protected Member Functions inherited from mirtk::Object
template<typename... Args>
static void ThrowStatic (ErrorType err, const char *cls, const char *func, Args... args)
 

Detailed Description

Normalized cross correlation image similarity measure

Deprecated:
Use NormalizedIntensityCrossCorrelation with (default) window size zero instead.

Definition at line 34 of file IntensityCrossCorrelation.h.


The documentation for this class was generated from the following file: