em-hard-segmentation <N> <atlas1> .. <atlasN> <output> [options]


Computes the hard segmentation of the N atlases. Optionally MRF smoothing can be additionally applied.

Input options

-mrftimes <number>

number of times the mrf term will be applied (default 0)

-mrfweight <double>

weight of the mrf term (default 1/3).

-posteriors <post1> .. <postN> write posteriors (useful when MRF is used).

Standard options

-v, -verbose [n]

Increase/Set verbosity of output messages. (default: 0)

-debug [level]

Increase/Set debug level for output of intermediate results. (default: 0)

-version [major.minor]

Print version and exit or set version to emulate.


Print revision (or version) number only and exit.

-h, -help

Print help and exit.